Package index

All functions

available_labels()

A list of the available Alaska area labels (900 +!)

available_shapefiles()

A list of the available shapefiles from MACEReports

build_biomass_at_age_table_summer_goa()

Create biomass at age table for MACE summer GOA cruise reports

build_biomass_at_age_table_winter_goa()

Create biomass at age table for MACE winter cruise reports

build_biomass_at_length_table_summer_goa()

Create biomass at length table for MACE summer GOA cruise reports

build_biomass_at_length_table_winter_goa()

Create biomass at length table for MACE winter GOA cruise reports

build_catch_table_summer_goa()

Create trawl catch table for MACE summer GOA cruise reports

build_haul_table()

Create trawl haul effort table for MACE cruise reports

build_nmfs_area_totals_table()

Create pollock biomass and numbers per NMFS management area table for MACE GOA summer cruise reports

build_numbers_at_age_table_summer_goa()

Create numbers at age table for MACE summer GOA cruise reports

build_numbers_at_age_table_winter_goa()

Create numbers at age table for MACE winter cruise reports

build_numbers_at_length_table_summer_goa()

Create numbers at length table for MACE summer GOA cruise reports

build_numbers_at_length_table_winter_goa()

Create numbers at length table for MACE winter cruise reports

build_sf_sticks()

Build stick objects from xyz (lat/long/abundance) data for use in stickplots

build_shelikof_pre_selectivity_corrected_biomass_age_table()

Create the old 'pre-selectivity era' biomass at age summary table for winter MACE cruise reports

build_shelikof_pre_selectivity_corrected_biomass_length_table()

Create the old 'pre-selectivity era' biomass at length table for winter MACE cruise reports

build_shelikof_pre_selectivity_corrected_num_age_table()

Create the old 'pre-selectivity era' numbers at age table for winter MACE cruise reports

build_shelikof_pre_selectivity_corrected_num_length_table()

Create the old 'pre-selectivity era' numbers at length table for winter MACE cruise reports

build_specimen_table_summer_goa()

Create biological specimen table for MACE summer GOA cruise reports

build_stick_legend()

Return a legend that can be added to stickplots

build_ts_relationships_table()

Create the standard MACE target strength relationships table

easy_plot_limits()

Set your ggplot map limits a bit more easily

get_area_labels()

Return Alaska area labels for plotting

get_basemap_layers()

Create a MACE-themed basemap

get_interpolated_color_bins()

Return logical breaks that can be used to plot abundance values

get_interpolated_plot_vals()

Return predicted biomass values that can be plotted in interpolated abundance and distribution maps

get_shapefile()

Return shapefiles that are used in MACEReports

plot_biomass_nums_by_age()

Get biomass- and numbers- by age plots with dual y-axis

plot_biomass_nums_by_length()

Get biomass- and numbers- by length plots with dual y-axis

plot_historical_age_comps_bubbleplot()

Bubbleplot of the historical numbers- and biomass- at age for the survey timeseries.

plot_historical_biomass_nums_length_ridges()

Plot 'ridgelines' comparing the survey timeseries biomass and numbers at length.

plot_length_and_weight_at_age()

Plot mean fish length- and weight- at age for the current survey, with historical length- and weight- at age for context.

plot_weight_at_length()

Plot mean fish weight at length for the current survey, with historical weight at length context.

shelikof_biomass

An example dataset consisting of pollock biomass values at length on a per-interval basis.

shelikof_sst

An example dataset consisting of sea surface temperatures.